miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|48820716|gb|CO122029.1|CO122029 CAGAGAAGAGATATAATTGAAAGAAAAGAAAAATGGTTCTGCTAAGAGAAACTTTGGGATGATGTAGTGGCCGGACCTCA
ACCGGAACGTGGCCTTGGCCGGCTGAGGAAGATCACAACCACCCCACCCTTGTCCACCAAAGATGAGGCTTCATCAATGG
CGATGCCGACGAGTCCGACGACACCTGGGACACCATCGACGCCGGTGTCGGCTCGTAGGGACAACGTGTGGAGGAGCGTG
TTCAATCCAGGTAGCAACCTTGCAACCAAAGGTATTGGCGCTGAAGTTTTCGACAAGCCTCAACCTAACTCTCCTACTGT
TTATGACTGGTTCGTACAGATTTTTTTTCTTGTTCAGTTATTTGCATGCATGCTTGCTTGGATAATTGGATATATATAAG
TGGGACTTTGATTTTGCTTTTTGGATGTTTGTGATCCCCATCTGTTTGGTTGCTGAGAAAATTAATCATAGAAGAGTCGT
ATATAAATATTAACCAGGTGTTTTGGAATTTGGATTCTTTTTAATATATAGTACTAAAATGATGAATTTTTCAAAAAGGA
AGCCTCAAAAACTTTCCTGTTTGTGTGTGTTTTTTTTTCTAACGTTTTCTCAGCAACCAAACGGAGGCTCAGAGACAGAT
CATGCAGGAAAACTTGGCTCTTTGTTTGGTAGCTGCGTGGAAATAACAGTATGCTGTAATTATTACACTAATCCATTTAT
AAGCTTTTATTTTTAATTATTCTTGTTTATTTACTATAAGATGATAAATAACCAAAGATTAATTAGGGTAATTTGCATGG
ATCTAATTTCTGGGTGTTAACTAAAATTTAAGAAGAAAGTTTGGTTCGGATGGGATGGGATGCAGGCTTTACAGCGGG




Most similar to sp|Q05349|12KD_FRAAN

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q05349|12KD_FRAAN Auxin-repressed 12.5 kDa protein OS=Fragaria
           ananassa PE=2 SV=1
          Length = 111

 Score =  107 bits (268), Expect = 9e-23
 Identities = 51/95 (53%), Positives = 61/95 (64%)
 Frame = +1

Query: 46  EKLWDDVVAGPQPERGLGRLRKITTTPPLSTKDEXXXXXXXXXXXXXXXXXXXXXXRRDN 225
           +KLWDD+VAGPQPERGLG LRK+     L  + E                      R+DN
Sbjct: 5   DKLWDDIVAGPQPERGLGMLRKVPQPLNLKDEGESSKITMPTTPTTPVTPTTPISARKDN 64

Query: 226 VWRSVFNPGSNLATKGIGAEVFDKPQPNSPTVYDW 330
           VWRSVF+PGSNL++K +G +VFD PQPNSPTVYDW
Sbjct: 65  VWRSVFHPGSNLSSKTMGNQVFDSPQPNSPTVYDW 99